Public Datasets

Dataset Name and Description Category Size Download
Acinetobacter baylyi 454 Inputs
This dataset contains 250,000 shotgun 454 titanium sequences (sff file) from an Acinetobacter baylyi genome project...
CloVR-Microbe 344.73 MB Download
Acinetobacter baylyi 454 Output
CloVR-Microbe 454 Output
CloVR-Microbe 7.03 MB Download
CloVR-DigiNorm Sample Input
This dataset contains genes from the HMP DACC Anterior Nares body site (sample SRS018671).
Other 25.20 MB Download
CloVR-DigiNorm Sample Output
Output from CloVR-DigiNorm pipeline. Normalized dataset contains 55,617 reads (160,492 reads before normalization).
Other 9.01 MB Download
E. coli 454 Inputs
This dataset contains 500,000 shotgun 454 titanium sequences (sff file) from an E. coli genome project as well as the...
CloVR-Microbe 628.91 MB Download
E. coli 454 Output
CloVR-Microbe 454 Output
CloVR-Microbe 11.72 MB Download
E. coli Illumina Inputs
This dataset contains paired-end shotgun Illumina sequences (fastq format) from an E. coli genome project as well as...
CloVR-Microbe 331.05 MB Download
E. coli Illumina Output
CloVR-Microbe Illumina Output
CloVR-Microbe 8.79 MB Download
HMP Metagenomics Sample Dataset
This dataset contains four multiple fasta files representing reads from four human microbiome samples — two mid...
CloVR-Metagenomics 409.00 MB Download
Human Contaminant Screening Inputs
This dataset contains paired-end shotgun Illumina sequences (fastq format). The dataset consists of a 50:50 mix of...
Illumina 103.20 MB Download
Human Contaminant Screening Output
Output from CloVR-Human Contaminant Screening (Paired) pipeline. 103,221 sequences were removed from 200,000...
Other 53.90 MB Download
Humanized Mice Inputs
Recently Turnbaugh, Gordon & colleagues (Science Translational Medicine Nov. 2009) studied the effect of diet on the...
CloVR-16S 9.67 MB Download
Humanized Mice Output
CloVR-16S pipeline output
CloVR-16S 16.60 MB Download
HUMAnN Sample Input
This dataset contains genes from the HMP DACC Anterior Nares body site (sample SRS019215).
Illumina 16.00 KB Download
HUMAnN Sample Output
Output from CloVR-HUMAnN pipeline.
Other 25.00 KB Download
Infant Gut Metagenome Inputs
Recently Koenig, Ley & colleagues (PNAS July 2010) studied changes in the developing infant gut microbiome using...
CloVR-Metagenomics 54.69 MB Download
Infant Gut Metagenome Output
CloVR-Metagenomics pipeline output
CloVR-Metagenomics 18.55 MB Download
Infant Gut Microbiome Inputs
Recently Koenig, Ley & colleagues (PNAS July 2010) studied changes in the developing infant gut microbiome using 16S...
CloVR-16S 15.63 MB Download
Infant Gut Microbiome Output
CloVR-16S pipeline output
CloVR-16S 7.62 MB Download
MetaHIT 100k Inputs
Recently the MetaHIT Consortium (Nature March 2010) performed a massive study of the human gut microbiome using...
CloVR-Search 2.54 MB Download
MetaHIT 100k Output
CloVR-Search Output
CloVR-Search 485.00 KB Download
Obese Lean Twin Gut Metagenome Inputs
The core gut microbiome of 154 obese and lean twins was studied by Turnbaugh, Gordon & colleagues (Nature Nov. 2008)...
CloVR-Metagenomics 64.45 MB Download
Obese Lean Twin Gut Metagenome Output
CloVR-Metagenomics pipeline output
CloVR-Metagenomics 27.34 MB Download