Public Datasets

Dataset Name and Description Category Size Download
Acinetobacter baylyi 454 Inputs
This dataset contains 250,000 shotgun 454 titanium sequences (sff file) from an Acinetobacter baylyi genome project...
CloVR-Microbe 344.73 MB Download
Acinetobacter baylyi 454 Output
CloVR-Microbe 454 Output
CloVR-Microbe 7.03 MB Download
E. coli 454 Inputs
This dataset contains 500,000 shotgun 454 titanium sequences (sff file) from an E. coli genome project as well as the...
CloVR-Microbe 628.91 MB Download
E. coli 454 Output
CloVR-Microbe 454 Output
CloVR-Microbe 11.72 MB Download
E. coli Illumina Inputs
This dataset contains paired-end shotgun Illumina sequences (fastq format) from an E. coli genome project as well as...
CloVR-Microbe 331.05 MB Download
E. coli Illumina Output
CloVR-Microbe Illumina Output
CloVR-Microbe 8.79 MB Download
HMP Metagenomics Sample Dataset
This dataset contains four multiple fasta files representing reads from four human microbiome samples — two mid...
CloVR-Metagenomics 409.00 MB Download
Humanized Mice Inputs
Recently Turnbaugh, Gordon & colleagues (Science Translational Medicine Nov. 2009) studied the effect of diet on the...
CloVR-16S 9.67 MB Download
Humanized Mice Output
CloVR-16S pipeline output
CloVR-16S 16.60 MB Download
Infant Gut Metagenome Inputs
Recently Koenig, Ley & colleagues (PNAS July 2010) studied changes in the developing infant gut microbiome using...
CloVR-Metagenomics 54.69 MB Download
Infant Gut Metagenome Output
CloVR-Metagenomics pipeline output
CloVR-Metagenomics 18.55 MB Download
Infant Gut Microbiome Inputs
Recently Koenig, Ley & colleagues (PNAS July 2010) studied changes in the developing infant gut microbiome using 16S...
CloVR-16S 15.63 MB Download
Infant Gut Microbiome Output
CloVR-16S pipeline output
CloVR-16S 7.62 MB Download
MetaHIT 100k Inputs
Recently the MetaHIT Consortium (Nature March 2010) performed a massive study of the human gut microbiome using...
CloVR-Search 2.54 MB Download
MetaHIT 100k Output
CloVR-Search Output
CloVR-Search 485.00 KB Download
Obese Lean Twin Gut Metagenome Inputs
The core gut microbiome of 154 obese and lean twins was studied by Turnbaugh, Gordon & colleagues (Nature Nov. 2008)...
CloVR-Metagenomics 64.45 MB Download
Obese Lean Twin Gut Metagenome Output
CloVR-Metagenomics pipeline output
CloVR-Metagenomics 27.34 MB Download